awk - manipulate text using shell script? -
how can manipulate text file using shell script?
input
chr2:98602862-98725768 chr11:3100287-3228869 chr10:3588083-3693494 chr2:44976980-45108665
expected output
2 98602862 98725768 11 3100287 3228869 10 3588083 3693494 2 44976980 45108665
using sed
can write
$ sed 's/chr//; s/[:-]/ /g' file 2 98602862 98725768 11 3100287 3228869 10 3588083 3693494 2 44976980 45108665
or maybe use awk
awk -f "chr|[-:]" '{print $2,$3, $4}' file 2 98602862 98725768 11 3100287 3228869 10 3588083 3693494 2 44976980 45108665
what does
-f "chr|[-:]"
sets field separatorschr
or:
or-
. print different fields or columns.you can use field separator
-f [^0-9]+
makes other digits separators.
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